112 lines
3.0 KiB
R
112 lines
3.0 KiB
R
#R script to upload the existing spreadsheets and homologise them
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library(magrittr)
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fList <- list.files("data", pattern="*.xlsx")
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#Objective to create data tables with
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linkCheck <- function(nodeType, nodeString, nodeStringCheck) {
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nodeString <- stringr::str_replace_all(nodeString, "\\.", " ")
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res <- sapply(nodeString, match, nodeStringCheck$Nodes) %>% is.na() %>% which()
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if (length(res)>0) print(paste("Clean up error found in", nodeType, "mapping at", names(res)))
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}
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getNodeVals <- function(nodeStr) {
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params <- stringr::str_split(nodeStr, ",") %>% unlist() %>% trimws()
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paramVals <- stringr::str_split(params, "=")
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vals <- c()
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lapply(paramVals, function(l) {
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val <- l[2]
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names(val) <- l[1]
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vals <<- c(vals, val)
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})
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vals
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}
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#We want to build a node table and an impact table.
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#Colnames of the node table will be
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#Hab, Node Type, Node, Node Layer, Growth, ....
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#The edges table will be
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#Hab, In Node, Out Node, Params, ....
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sheetNames <- c("TestScenario", "Map_P_BA", "Map_BA_OP", "Map_OP_ES", "Legend")
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cleanNames <- function(namVec) {
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stringr::str_replace_all(namVec, "\\.", " ") %>% trimws() %>% tolower()
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}
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nodeTable <- tibble::tibble()
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for (wbIdx in 1:length(fList)) {
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wb <- openxlsx::loadWorkbook(paste0("data/", fList[wbIdx]))
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hab <- stringr::str_split(fList[wbIdx], "\\.")[[1]][1]
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#get pressure names
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#Drop the time column no use at all....
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sheet <- openxlsx::readWorkbook(wb, sheet=sheetNames[1])[ ,-1]
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pressures <- cleanNames(colnames(sheet))
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pressure_nodes <- sheet[1,]
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sheet <- openxlsx::readWorkbook(wb, sheet=sheetNames[2])[ ,-1]
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pressure_check <- na.omit(sheet[,1:2])
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sheet2 <- na.omit(sheet[, -c(1,2)])
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ba <- cleanNames(colnames(sheet2))
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ba_nodes <- sheet2[1,]
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pressImpact <- sheet2[-1,]
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#linkCheck("pressures", pressures, pressure_check)
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sheet <- openxlsx::readWorkbook(wb, sheet=sheetNames[3])[ ,-1]
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ba_check <- na.omit(sheet[,1:2])
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sheet2 <- na.omit(sheet[, -c(1,2)])
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op <- cleanNames(colnames(sheet2))
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op_nodes <- sheet2[1,]
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baImpact <- sheet2[-1,]
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#linkCheck("bioassemblages", ba, ba_check)
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sheet <- openxlsx::readWorkbook(wb, sheet=sheetNames[4])[ ,-1]
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op_check <- na.omit(sheet[,1:2])
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sheet2 <- na.omit(sheet[, -c(1,2)])
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es <- cleanNames(colnames(sheet2))
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es_nodes <- sheet2[1,]
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opImpact <- sheet2[-1,]
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#linkCheck("outputprocesses", op, op_check)
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legend <- openxlsx::readWorkbook(wb, sheet=sheetNames[5])
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nodeType <- c(
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rep("pressure", length(pressures)),
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rep("bioassemblage", length(ba)),
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rep("outputprocess", length(op)),
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rep("ecosystemservice", length(es))
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)
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res <- t(sapply(es_nodes[1,], getNodeVals)) %>% as.data.frame()
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names(res) <- cleanNames(names(res))
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res <- res %>% mutate(nodeName=names(res))
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nodeTable <- nodeTable %>% dplyr::bind_rows(
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tibble::tibble(
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hab=hab,
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nodeType=nodeType,
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res
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)
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)
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}
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mapNewNames <- function() {
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newNameMap <- openxlsx::read.xlsx("MBA_MESO_Nodes.xlsx") %>%
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dplyr::select(hab, nodeType, Suggestion, node, newname)
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save(newNameMap, file="nameMap.RData")
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}
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