Installation

Required R libraries:

• bnlearn
• DT
• ggplot2
• graph
• htmltools
• kableExtra
• knitr
• magrittr
• openxlsx
• plotly
• processx
• RColorBrewer
• shiny
• shinyBS
• shinycssloaders
• shinydashboard
• shinydashboardPlus
• shinyjs
• stringr
• vizNetwork
• zip

install.packages(c("bnlearn", "DT", "ggplot2", "graph", "htmltools", "kableExtra", "knitr", "magrittr", "openxlsx", "plotly", "processx", "RColorBrewer", "shiny", "shinyBS", "shinycssloaders", "shinydashboard", "shinydashboardPlus", "shinyjs", "stringr", "vizNetwork", "zip", "devtools"))
devtools::install_github("ropensci/plotly")

ORCA for downloads:

• NodeJs (v8)
• electron
• orca

npm install 
export PATH=`pwd`/node_modules/.bin:$PATH

NOTE: remember to export the path when running the application so that R can find orca

Start script (optional)

Assumes application runs under the shiny account

#!/bin/bash

if [ "$(whoami)" != "shiny" ]; then
    sudo -u shiny $0
    exit 1
fi

export NVM_DIR="$HOME/.nvm"
[ -s "$NVM_DIR/nvm.sh" ] && \. "$NVM_DIR/nvm.sh"  # This loads nvm

export PATH=/srv/shiny/bin:$PATH

screen -dmS MESO R --vanilla -e "shiny::runApp('app.R', host = '0.0.0.0', port = 6376)"